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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140337323_140338066_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140337323 - 140338066
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTGCTTTATCC
Flanking Amino Acid:
TSIDVVKKASGLDWDSISEC
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.3
0.75
0.8
76.9
31.6
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
60.7
0.31
1.7
70.66
41

Associated Gene:

Gene:
CCNE2
Ensembl Gene ID:
ENSAPLG00000007612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007956
140328891 - 140338699
9809