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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140338222_140338597_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140338222 - 140338597
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGGC
5'SS Class:
major
3'SS Sequence:
CCCCCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTGGTATTAACT
Flanking Amino Acid:
QTHTNYLDMLEEVNSGVVSA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
59.5
39.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
70.3
0.46
0.7
63.4
24.7
Minor 5ss
26.3
-2.7
3.2
31.1
38
Minor BPS
56.6
0.29
1.8
72.1
45

Associated Gene:

Gene:
CCNE2
Ensembl Gene ID:
ENSAPLG00000007612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007956
140328891 - 140338699
9809