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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140340134_140340340_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140340134 - 140340340
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTCTTTTATT
Flanking Amino Acid:
RGETDKRQIAIKAIGQTELN
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.9
0.65
1
83.8
30
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
62.6
0.48
1.6
75.01
42.5

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880