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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140340385_140340481_R

Intron Information:

Intron Rank:
25
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
140340385 - 140340481
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AATTCACCTTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
ATCTCCTTAATT
Flanking Amino Acid:
WDVTILEYLTYLHHKRGETD
Intron Amino Acid Position:
943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
73.1
0.52
0.9
68.1
38
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
84.6
1.16
1
90.25
33.9

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880