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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140340547_140340634_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140340547 - 140340634
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ATGTCACTAATT
Flanking Amino Acid:
TAFKALQEQNSHDAMDSYYE
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
55.8
0.26
1.9
76.54
39.9

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880