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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140343506_140344442_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140343506 - 140344442
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
YISIWPSSIPNLQSVDFEAV
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
87.4
0.84
0.6
86.4
20.3
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880