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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140344505_140344584_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140344505 - 140344584
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGTACG
5'SS Class:
major
3'SS Sequence:
TCTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTTCTTTTACT
Flanking Amino Acid:
SLFVKLHNVREDIVNDITAE
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
67.4
43.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.9
0.78
0.6
84.8
22.8
Minor 5ss
32
-2.1
2.3
28.7
35
Minor BPS
75.8
0.89
1.5
90.35
33.1

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880