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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140347778_140348343_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140347778 - 140348343
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTCCCTCAAAA
Flanking Amino Acid:
VRGYLEMRVPDIPLRQVIAE
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.4
0.82
0.8
78
36.1
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
67
0.53
1.6
79.17
36.3

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880