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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140348546_140349195_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140348546 - 140349195
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GAGCCATTAACG
Flanking Amino Acid:
AKGLHCSAIKDFVHAKQLFA
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
80.2
0.68
0.8
76.2
32.4
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
54.5
0
1.7
56.7
43.8

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880