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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140350684_140350818_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140350684 - 140350818
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TTTATTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
SLKRKMASFLKNLCLGLEDL
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.9
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.1
0.72
0.8
82.1
34.6
Minor 5ss
46.2
-0.4
2.5
61.3
37
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880