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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140350890_140352054_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140350890 - 140352054
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TACTGCTTACTT
Flanking Amino Acid:
NKEKIDFLLEACSRSINLEN
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
80.3
0.68
0.8
73.1
37
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
53.4
0.19
2.1
72.44
45

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880