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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140352197_140352842_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140352197 - 140352842
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
TGTGTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGTTCTGTGATC
Flanking Amino Acid:
QRELFQNALQGNDALEEVCF
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.5
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76
0.59
1
70.3
40.4
Minor 5ss
33.8
-1.8
3.1
39.1
46.1
Minor BPS
49.9
-0
2
63.96
36.1

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880