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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140357374_140359522_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140357374 - 140359522
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
TTCTTTCTGACA
Flanking Amino Acid:
LKWDLDVLEKSLSVPVLNML
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
70
0.5
1
59.3
39.1
Major PPT
82.3
0.73
0.9
79.8
32.3
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
56.6
0.2
1.6
70.09
36.3

Associated Gene:

Gene:
INTS8
Ensembl Gene ID:
ENSAPLG00000007030
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007357
140340017 - 140360896
20880