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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140364918_140365329_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140364918 - 140365329
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTCTGACAT
Flanking Amino Acid:
NEEGGGECDQTAYDINELKK
Intron Amino Acid Position:
2566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
52
0.14
1.9
73.47
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085