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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140374613_140375625_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140374613 - 140375625
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGGG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAATT
Flanking Amino Acid:
GTCVDTDLGYRCKCSPNFHG
Intron Amino Acid Position:
1950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
59.2
45.8
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.8
77.6
29.7
Minor 5ss
27.1
-2.6
3.1
32.2
42.4
Minor BPS
75.4
0.87
1.5
92.5
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085