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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140375904_140376841_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140375904 - 140376841
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTGTTCTCCACA
Flanking Amino Acid:
NGNVAASRAWLENILAINIT
Intron Amino Acid Position:
1858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.6
0.71
0.8
76.7
32.1
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
54.3
0.13
2
70.88
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085