Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140377075_140377678_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140377075 - 140377678

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCTGTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AGGTTTTTAAAT

Flanking Amino Acid:

LRNAGSVRIKDITPEEFISQ

Intron Amino Acid Position:

1780

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.9

0.74

0.9

76.3

37.2

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

62.4

0.47

1.4

71.81

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006639

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006900

140364516 - 140403600

39085