Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140378755_140380384_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140378755 - 140380384

Intron Length:

1630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGCCC

5'SS Class:

major

3'SS Sequence:

TGTGTTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TCGTTCTGACTA

Flanking Amino Acid:

YMECLIYSYDGILPMTVLGQ

Intron Amino Acid Position:

1687

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

62.2

41.1

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

75.8

0.58

0.9

73.5

41.9

Minor 5ss

32.5

-2

3.3

44.2

43.2

Minor BPS

49.1

-0

1.7

58.96

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006639

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006900

140364516 - 140403600

39085