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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140383994_140384148_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140383994 - 140384148
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTAGTCTACA
Flanking Amino Acid:
RPGVHGQPNTDTAYVRIFVS
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
68.4
0.42
0.8
66
35.8
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
44.8
-0.4
2.6
68.88
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085