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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140385423_140387544_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140385423 - 140387544
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATTTTCTCACCA
Flanking Amino Acid:
SFTTVCINVTDVNDNVPFFM
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
58.9
0.28
1.8
73.6
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085