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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140387795_140388465_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140387795 - 140388465
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CACTTCATCATT
Flanking Amino Acid:
ENTTRDTRVVTIKATSPLGD
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.1
34
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
91.1
0.92
0.6
89.5
19.1
Minor 5ss
38.6
-1.3
3
45.8
44.7
Minor BPS
45.7
-0.2
2
60.87
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085