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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140388634_140388758_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140388634 - 140388758
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
ATATCCTCCATC
Flanking Amino Acid:
WVYVNRPISQATRISCYVVA
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
60.3
0.26
1
65.5
28
Major PPT
80.3
0.68
0.8
76.5
32.1
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
51.7
0.04
2
66.03
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085