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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140388932_140391519_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140388932 - 140391519
Intron Length:
2588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TGTCTTCTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
GTCTTCTCAAAG
Flanking Amino Acid:
EPKFENSRYQYFLSEDTPVG
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.4
35.5
Major BPS
59.7
0.24
1
67
29.8
Major PPT
70
0.45
1
70.7
33.9
Minor 5ss
30.9
-2.2
3.3
40.8
45.4
Minor BPS
51.7
-0
1.7
57.37
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085