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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140394633_140394821_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140394633 - 140394821
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTCTGTGCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CGCCCTCCAATT
Flanking Amino Acid:
NDEAPVFSQPVYRTFISEDA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.2
56.2
43.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
69.8
0.45
1
62.7
43.1
Minor 5ss
40.2
-1.1
3.1
51.7
45
Minor BPS
43.5
-0.4
1.8
54.82
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006900
140364516 - 140403600
39085