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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14040010_14054796_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14040010 - 14054796
Intron Length:
14787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
PGVPTTHERKKDENYRSLPR
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77.3
31.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.9
0.45
1
67.6
36.9
Minor 5ss
50.8
0.03
2.5
69.7
41.2
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
PARD3
Ensembl Gene ID:
ENSAPLG00000014767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015447
13864772 - 14305998
441227
ENSAPLT00000041564
13864772 - 14307028
442257
ENSAPLT00000003606
13864772 - 14305998
441227
ENSAPLT00000038237
13864772 - 14307028
442257
ENSAPLT00000003604
13864772 - 14305998
441227
ENSAPLT00000021470
13864772 - 14307028
442257
ENSAPLT00000019870
13864772 - 14307028
442257