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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140414235_140415105_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140414235 - 140415105
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGATTTTTACCT
Flanking Amino Acid:
DDDLLKRNENIYQIYSKRSA
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.2
0.66
0.9
72.3
36.5
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
62.5
0.47
1.6
76.8
39.9

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343