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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140415239_140416931_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140415239 - 140416931
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATGTAT
U12 Branch Point Sequence:
TGCACTCAGACA
Flanking Amino Acid:
PDTVELMTWIKRQAPVAAVF
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
51.4
0.04
1.4
53
42.8
Major PPT
82.8
0.74
0.9
76.8
37.3
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
42.8
-0.5
1.9
52.28
39.7

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343