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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140422108_140423245_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140422108 - 140423245
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CACTATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAG
U12 Branch Point Sequence:
AGCTCTTGCACT
Flanking Amino Acid:
LLGSLAMCLEGMKYLWTPYV
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
54
0.1
1.4
61.7
34.1
Major PPT
79.7
0.67
0.9
76.4
37
Minor 5ss
38.3
-1.3
3
45.5
42.6
Minor BPS
49.3
0.03
1.9
67.72
43.1

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343