About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140426906_140428032_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140426906 - 140428032
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
AATTAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTAAATTAATT
Flanking Amino Acid:
ITLTLNFLLKMFVPHKENEH
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.8
0.58
1
71.1
43.3
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
49.9
0.07
1.8
67.96
42.5

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343