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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140429422_140430000_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140429422 - 140430000
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
LKKNLNCSAEKFCYLLVSAS
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343