About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140430125_140431844_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140430125 - 140431844
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AAATCTTTAATA
Flanking Amino Acid:
MLTVAWFIINRTDTTRIDYS
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
80
0.75
1
78.6
31
Major PPT
77.9
0.63
0.8
70.6
39.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
72.7
0.71
1.1
71.88
33.7

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343