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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140431991_140432812_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140431991 - 140432812
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGCG
5'SS Class:
major
3'SS Sequence:
TTTGTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTGTAATT
Flanking Amino Acid:
SVLYQASGSEEVIEPVYFYI
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
65.2
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
40.8
-1
3
50
40.7
Minor BPS
59.2
0.37
2
79.64
37.1

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343