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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140436335_140438932_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140436335 - 140438932
Intron Length:
2598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
AAAATGTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
GTTGCAATAACT
Flanking Amino Acid:
AGGGRRAMEEGAADLRQRRK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
64.9
0.34
1.1
59.3
46
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
55.5
0.25
2
79.33
42

Associated Gene:

Gene:
DPY19L4
Ensembl Gene ID:
ENSAPLG00000006172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006412
140411963 - 140439305
27343