Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1404526_1404627_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1404526 - 1404627

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGGGT

5'SS Class:

major

3'SS Sequence:

CCTGTCCCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATTAC

U12 Branch Point Sequence:

ACCCCATTACTT

Flanking Amino Acid:

GAEPRPAQTQAPLTHSLGTG

Intron Amino Acid Position:

1186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

62.8

41.6

Major BPS

49.9

-0

1.2

43.3

37.4

Major PPT

67.9

0.4

0.8

28.8

Minor 5ss

36.4

-1.5

3.7

55.4

48.8

Minor BPS

-0.1

1.9

60.57

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029857

1399479 - 1405614

6136

ENSAPLT00000019056

1399479 - 1407649

8171