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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140520_145276_F

Intron Information:

Intron Rank:
141621
Intron Class:
major
Intron Phase:
Intron Coordinates:
140520 - 145276
Intron Length:
4757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
84.8
0.78
0.7
79.7
25.7
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036584
140385 - 146422
6038