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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140534678_140536282_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140534678 - 140536282
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAGGTCTTAACC
Flanking Amino Acid:
GLSPPPCKLPCLSPPSYSFP
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.8
0.69
0.7
78.7
30.2
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
64.2
0.42
1.4
65.33
40.3

Associated Gene:

Gene:
ESRP1
Ensembl Gene ID:
ENSAPLG00000013868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014482
140527666 - 140553916
26251