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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140538445_140539517_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140538445 - 140539517
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTTTTTGTAACC
Flanking Amino Acid:
FRSTAAEVQQVLNRYSSTPL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
72.3
0.5
1
67.7
37.8
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
59
0.26
2
72.92
38.9

Associated Gene:

Gene:
ESRP1
Ensembl Gene ID:
ENSAPLG00000013868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014482
140527666 - 140553916
26251