About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140541164_140541251_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140541164 - 140541251
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TTCCCTTTCATT
Flanking Amino Acid:
KHHMGNRYIEVYKATGEDFL
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71
32.7
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
73.2
0.52
0.8
73.9
29.6
Minor 5ss
34.6
-1.8
3.1
44.1
43.8
Minor BPS
59.2
0.37
1.7
76.64
40.8

Associated Gene:

Gene:
ESRP1
Ensembl Gene ID:
ENSAPLG00000013868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014482
140527666 - 140553916
26251