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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140541585_140543316_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140541585 - 140543316
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGGTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATTAT
U12 Branch Point Sequence:
CGAGCATTATTT
Flanking Amino Acid:
RVNYKFESGPCSKMELVDDN
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
54.4
0.11
1.4
48
45.4
Major PPT
73.4
0.53
1
66.3
40.8
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
45.4
-0.2
1.9
58.47
44.6

Associated Gene:

Gene:
ESRP1
Ensembl Gene ID:
ENSAPLG00000013868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014482
140527666 - 140553916
26251