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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140550001_140552501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140550001 - 140552501
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TGTCCTTTTACA
Flanking Amino Acid:
QVLHPEASKKNILLPECFYS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
85.5
0.8
0.8
79.7
32.4
Minor 5ss
35
-1.7
2.9
45.9
42.2
Minor BPS
64
0.44
1.6
73.8
37.3

Associated Gene:

Gene:
ESRP1
Ensembl Gene ID:
ENSAPLG00000013868
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014482
140527666 - 140553916
26251