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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1405509_1405599_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1405509 - 1405599
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TTTCCCCCCACA
Flanking Amino Acid:
NNNDIVNAIMELTM*
Intron Amino Acid Position:
1348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
57.6
43
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
31.9
-2.1
3
35.3
42.3
Minor BPS
47.6
-0.1
2.3
70.3
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030207
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029857
1399479 - 1405614
6136