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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140558064_140560529_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140558064 - 140560529
Intron Length:
2466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTACATTTCATC
Flanking Amino Acid:
LDTFKHQSAEQSTNIDVVRF
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.8
0.78
0.7
80.6
31.4
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
47.7
-0.2
1.9
61.44
38

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022727
140558001 - 140575428
17428
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596