About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140560646_140560885_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140560646 - 140560885
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATGGGTTTAATT
Flanking Amino Acid:
HTSLPDSRAYGETSPHTFQL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.8
0.72
0.9
72.8
42.2
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
53
0.17
1.9
69.26
42.8

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000022727
140558001 - 140575428
17428
ENSAPLT00000014889
140558001 - 140581596
23596