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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140560646_140561367_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140560646 - 140561367
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CCACTTTTAACA
Flanking Amino Acid:
HTSLPDSRAYGLEYDENTSI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
72.8
0.51
0.9
68.5
35.8
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
59.7
0.3
1.3
60.59
39.8

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025096
140558001 - 140581596
23596