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Intron Name: Anas_platyrhynchos_platyrhynchos_2_140561417_140562066_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

140561417 - 140562066

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCAA

5'SS Class:

major

3'SS Sequence:

AAAAACAAAACAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTTCCTTTAAAA

Flanking Amino Acid:

TSIIFRPNAKVNTDGLVLRG

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

67.7

Major BPS

73.1

0.58

79.6

29.1

Major PPT

47.3

-0.1

1.1

34.6

38.6

Minor 5ss

30.1

-2.3

3.2

38.5

46.5

Minor BPS

75.1

0.78

1.3

82.33

31.7

Associated Gene:

Gene:

VIRMA

Ensembl Gene ID:

ENSAPLG00000014267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025096

140558001 - 140581596

23596

ENSAPLT00000022727

140558001 - 140575428

17428

ENSAPLT00000014889

140558001 - 140581596

23596

ENSAPLT00000035201

140558001 - 140581596

23596

ENSAPLT00000027878

140558001 - 140581596

23596