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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140562236_140563148_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
140562236 - 140563148
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
ATAATAAACATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAATA
Flanking Amino Acid:
QPGLKRNPKHADGEKEDQFN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
52.4
0.05
1
45.3
39.8
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
66.9
0.53
1.6
76.77
33.9

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000022727
140558001 - 140575428
17428
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596