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Intron Name: Anas_platyrhynchos_platyrhynchos_2_140563272_140563823_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140563272 - 140563823

Intron Length:

552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAACCA

5'SS Class:

major

3'SS Sequence:

TATTTTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

ATTTCTGAAACT

Flanking Amino Acid:

DDEDEPMPVSVVGEKEDDVD

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

58.6

40.5

Major BPS

82.1

0.8

71.6

36.4

Major PPT

89.4

0.89

0.7

89.2

27.3

Minor 5ss

30.2

-2.3

3.3

39.8

45.7

Minor BPS

55.1

0.24

2.3

81.74

40.3

Associated Gene:

Gene:

VIRMA

Ensembl Gene ID:

ENSAPLG00000014267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025096

140558001 - 140581596

23596

ENSAPLT00000022727

140558001 - 140575428

17428

ENSAPLT00000014889

140558001 - 140581596

23596

ENSAPLT00000035201

140558001 - 140581596

23596

ENSAPLT00000027878

140558001 - 140581596

23596