Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140565968_140566362_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

140565968 - 140566362

Intron Length:

395

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TTT|GCAAGGTCA

5'SS Class:

major

3'SS Sequence:

GGCAAAACAGAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GAATTAC

U12 Branch Point Sequence:

GTGTGCTGAGCT

Flanking Amino Acid:

PYPVLFRYGFSGVLFCQRAQ

Intron Amino Acid Position:

686

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.7

0.32

1.4

38.7

Major BPS

49.7

-0

1.2

43.7

38.9

Major PPT

44.3

-0.3

1.1

32.7

Minor 5ss

29.3

-2.4

4.2

44.7

44.3

Minor BPS

48.2

-0

2.1

69.77

46.6

Associated Gene:

Gene:

VIRMA

Ensembl Gene ID:

ENSAPLG00000014267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035201

140558001 - 140581596

23596

ENSAPLT00000022727

140558001 - 140575428

17428