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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140567424_140568169_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140567424 - 140568169
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
ATCGTTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AAATTCTTATCG
Flanking Amino Acid:
LMEYYSKEALGDSKSKKSVA
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
76.8
34.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
74.7
0.56
1
65.3
45
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
57.6
0.1
1.7
59.69
41.8

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000022727
140558001 - 140575428
17428