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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_140568325_140569728_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140568325 - 140569728
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCGT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATTAATT
Flanking Amino Acid:
KADENNTKLQELSKWLEPLK
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
64.3
47.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
31.1
-2.2
3.6
47.2
48.2
Minor BPS
62.3
0.47
2
83.58
37.4

Associated Gene:

Gene:
VIRMA
Ensembl Gene ID:
ENSAPLG00000014267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014889
140558001 - 140581596
23596
ENSAPLT00000035201
140558001 - 140581596
23596
ENSAPLT00000027878
140558001 - 140581596
23596
ENSAPLT00000025096
140558001 - 140581596
23596
ENSAPLT00000022727
140558001 - 140575428
17428